PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gorai.009G226200.2
Common NameB456_009G226200
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family bHLH
Protein Properties Length: 322aa    MW: 36578.4 Da    PI: 4.4829
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gorai.009G226200.2genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH32.71.3e-10174217654
                         HHHHHHHHHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHH CS
                 HLH   6 nerErrRRdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksL 54 
                          ++ErrRR+r+N++++ Lr+++Pk +      K++  +iL  +++Y k+L
  Gorai.009G226200.2 174 LMAERRRRKRLNDRLSMLRSIVPKiS------KMDRTSILVDTIDYTKEL 217
                         589*********************66......**************8876 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088814.926168217IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474597.07E-15172241IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000102.9E-8174217IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003533.8E-10174223IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.101.8E-14175235IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000831.41E-4175227No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 322 aa     Download sequence    Send to blast
MELDINEQSF LQELLALRRD NWDTVPPQMN DIFSNGFNFD CFDDASAAAG FLPQSFCQDF  60
SLPLEQDLSF NFDEAYGPFG DEFSAAPQVT DTSSNTFDTL PFPVQDDHRH WMNMVEEEEW  120
GTLVDEINML DPQAPACKVE PIRSPEAPVF NVGSCSVDRN NRAKRLKGQP SKNLMAERRR  180
RKRLNDRLSM LRSIVPKISK MDRTSILVDT IDYTKELLER IKSLQQEMEA GPNELNMSHI  240
FKDVKPNEIL VRKTPKFEVE RRNVDTRIEI CCTGKPGLLL STLTTLEALG LDIQQCVISC  300
FNDFAMQASC AEVTKTSDRN C*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1176183ERRRRKRL
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012448276.10.0PREDICTED: transcription factor bHLH93-like
SwissprotQ9LSL18e-65BH093_ARATH; Transcription factor bHLH93
TrEMBLA0A0D2TTZ60.0A0A0D2TTZ6_G
STRINGVIT_18s0001g08040.t011e-125(Vitis vinifera)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G65640.11e-52beta HLH protein 93
Publications ? help Back to Top
  1. Paterson AH, et al.
    Repeated polyploidization of Gossypium genomes and the evolution of spinnable cotton fibres.
    Nature, 2012. 492(7429): p. 423-7
    [PMID:23257886]